SparseMRI is a collection of Matlab functions that implement the algorithms and examples described in the paper M. Matlab Library: - Includes implementations of SPIRiT, ESPIRiT, Coil Compression, SAKE low-rank calibrationless Parallel Imaging and poisson-disc sampling. Lustig, Calibrationless Parallel Imaging Reconstruction Based on Structured Low-Rank Matrix Completion, 2013, accepted to Magn Reson Med. Lustig, ESPIRiT – An Eigenvalue Approach to Autocalibrating Parallel MRI: Where SENSE meets GRAPPA, MRM 2013 published on-line Coil Compression for Accelerated Imaging with Cartesian Sampling MRM 2013 69(2):571-82] Zhang T, Pauly JM, Vasanawala SS, Lustig M. Pauly SPIRiT: Iterative Self-Consistent Parallel Imaging Reconstruction from Arbitrary k-Space Sampling MRM 2010 64(2):457-71 The Matlab code is a reference to the following papers: doi: 10.1002/mrm.26102Ĭode and examples: GitHub Page ESPIRiT: Reference Implementation of Compressed Sensing and Parallel Imaging in Matlab (2016), T2 shuffling: Sharp, multicontrast, volumetric fast spin-echo imaging. I., Uecker, M., Chen, W., Lai, P., Alley, M.
The code was developed by Jon Tamir to demonstrate the methods and reproduce the figures in the paper: Resolve multiple image contrasts along the T2 relaxation curve. T2 Shuffling accounts for temporal dynamics during the echo trains to reduce image blur and The following code contains a Matlab reference implementation of T2 Shuffling, an acquisition and reconstruction methodīased on 3D fast spin-echo. T2 Shuffling: Sharp, Multicontrast, Volumetric Fast Spin-Echo Imaging Its main features include:Ĭommonly used MRI reconstruction methods as an App: SENSE reconstruction, l1-wavelet reconstruction, total-variation reconstruction, and JSENSE reconstructionĬonvenient simulation and sampling functions, including poisson-disc sampling function, and shepp-logan phantom generation function.įinally, SigPy provides a preliminary submodule sigpy.learn that implements convolutional sparse coding, and linear regression, using the core module SigPy also provides a submodule sigpy.mri for MRI iterative reconstruction methods. Iterative algorithm classes (Alg), including conjugate gradient, (accelerated/proximal) gradient method, and primal dual hybrid gradient.Īpplication classes (App) that wrap Alg, Linop, and Prox to form a final deliverable for each application. Proximal operator classes (Prox) that can do stacking, and conjugation. Linear operator classes (Linop) that can do adjoint, addition, composing, and stacking. Its main features include:Ī unified CPU/GPU interface to signal processing functions, including convolution, FFT, NUFFT, wavelet transform, and thresholding functions. Written by Frank Ong, this package is built to operate directly on numpy arrays on CPU and cupy arrays on GPU. SigPy: A Python package, for signal processing with emphasis on iterative methods. The command-line tools provide direct access to basic operations on multi-dimensional arrays as well as efficient implementations of many calibration and reconstruction algorithms for parallel imaging and compressed sensing. The library provides common operations on multi-dimensional arrays, Fourier and wavelet transforms, as well as generic implementations of iterative optimization algorithms. It consists of a programming library and a toolbox of command-line programs.
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The Berkeley Advanced Reconstruction Toolbox (BART) is a free and open-source image-reconstruction framework for Magnetic Resonance Imaging (MRI). If you need a state of the art, efficient implementation of parallel imaging and compressed sensing, you have reached the right place.
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Software BART: Berkeley Advanced Reconstruction Toolbox In addition to undersampled datasets, we also provide separate cases of fully sampled knees, for researchers who wish to experiment with their own undersampling patterns At present, all of the datasets are of knee images. The undersampled datasets are of two varieties: variable-density undersampling and uniform-density undersampling. Shreyas Vasanawala at Stanford's Lucille Packard Children's Hospital. These datasets were acquired through a collaboration between Michael Lustig at UC Berkeley and Dr.
This web site provides open datasets to researchers who desire to contribute to a community of reproducible research, where they can test and validate their algorithms against known undersampled acquisitions. Data Fully sampled and undersampled datasets – work in progress
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